U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX1839334: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Uganda by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 558.7M bases, 294Mb downloads

External Id: EXT00192189
Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)
Study: GenomeTrakr Project: UCD Centre for Food Safety
PRJNA243636 • SRP056877 • All experiments • All runs
show Abstracthide Abstract
Microbial foodborne pathogens sequenced for the UCD Centre for Food Safety Genome sequencing
Sample:
SAMN03329202 • SRS1498517 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Uganda
Library:
Name: Salmonella enterica subsp. enterica serovar Uganda Nextera XT shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Uganda.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.8.5
demultiplexer10MiSeq Reporter2.3
Runs: 1 run, 1.4M spots, 558.7M bases, 294Mb
Run# of Spots# of BasesSizePublished
SRR36605591,402,474558.7M294Mb2016-06-13

ID:
2628931

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...